Mercurial > repos > jjohnson > cdhit
comparison cd_hit_est.xml @ 2:c99f307f2bdb
correct requirement - cd-hit
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 07 Sep 2012 09:47:58 -0500 |
| parents | 12447208b8cb |
| children | 22a3fc9a14d7 |
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| 1:12447208b8cb | 2:c99f307f2bdb |
|---|---|
| 1 <tool id="cd_hit_est" name="CD-HIT-EST" version="1.0"> | 1 <tool id="cd_hit_est" name="CD-HIT-EST" version="1.0"> |
| 2 <description>Cluster a nucleotide dataset into representative sequences</description> | 2 <description>Cluster a nucleotide dataset into representative sequences</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="4.6.1">cd-hit-est</requirement> | 4 <requirement type="package" version="4.6.1">cd-hit</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command> | 6 <command> |
| 7 cd-hit-est -i $fasta_in -o rep_seq -c $similarity -n $wordsize $strand | 7 cd-hit-est -i $fasta_in -o rep_seq -c $similarity -n $wordsize $strand |
| 8 </command> | 8 </command> |
| 9 <inputs> | 9 <inputs> |