Mercurial > repos > jjohnson > bcftools_stats
comparison bcftools_stats.xml @ 1:d541f5c15870 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
| author | jjohnson |
|---|---|
| date | Sun, 26 Jun 2016 15:44:28 -0400 |
| parents | b2f7a15398b4 |
| children |
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| 0:b2f7a15398b4 | 1:d541f5c15870 |
|---|---|
| 103 </data> | 103 </data> |
| 104 </outputs> | 104 </outputs> |
| 105 <tests> | 105 <tests> |
| 106 <test> | 106 <test> |
| 107 <param name="input_files" ftype="vcf" value="stats.b.vcf,stats.a.vcf" /> | 107 <param name="input_files" ftype="vcf" value="stats.b.vcf,stats.a.vcf" /> |
| 108 <param name="samples" value="-" /> | |
| 109 <output name="output_file"> | 108 <output name="output_file"> |
| 110 <assert_contents> | 109 <assert_contents> |
| 111 <has_text_matching expression="SN\t0\tnumber of samples:\t3"/> | 110 <has_text_matching expression="SN\t0\tnumber of samples:\t3"/> |
| 112 <has_text_matching expression="SN\t1\tnumber of samples:\t3"/> | 111 <has_text_matching expression="SN\t1\tnumber of samples:\t3"/> |
| 113 </assert_contents> | 112 </assert_contents> |
| 114 </output> | 113 </output> |
| 115 </test> | 114 </test> |
| 116 <test> | 115 <test> |
| 117 <param name="input_files" ftype="vcf" value="mpileup.vcf" /> | 116 <param name="input_files" ftype="vcf" value="mpileup.vcf" /> |
| 118 <param name="samples" value="-" /> | |
| 119 <output name="output_file"> | 117 <output name="output_file"> |
| 120 <assert_contents> | 118 <assert_contents> |
| 121 <has_text_matching expression="SN\t0\tnumber of samples:\t3"/> | 119 <has_text_matching expression="SN\t0\tnumber of samples:\t3"/> |
| 122 <has_text_matching expression="SN\t0\tnumber of records:\t4103"/> | 120 <has_text_matching expression="SN\t0\tnumber of records:\t4103"/> |
| 123 <has_text_matching expression="SN\t0\tA>C\t16"/> | 121 <has_text_matching expression="ST\t0\tA>C\t16"/> |
| 124 </assert_contents> | 122 </assert_contents> |
| 125 </output> | 123 </output> |
| 126 </test> | 124 </test> |
| 127 </tests> | 125 </tests> |
| 128 <help><![CDATA[ | 126 <help><![CDATA[ |