Mercurial > repos > jjohnson > bcftools_plugin_missing2ref

view test-data/concat.3.a.vcf @ 0:ff65d6e0809b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
author jjohnson
date Sat, 25 Jun 2016 20:51:04 -0400
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##fileformat=VCFv4.0
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FILTER=<ID=q10,Description="Quality below 10">
##contig=<ID=9,length=62435964>
##contig=<ID=1,length=62435964>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A	B
9	202	.	GTTT	G	1806	q10	DP=35	GT:GQ:DP	0|1:409:35	0|1
9	212	.	C	T,G	1792	PASS	DP=32	GT:GQ:DP	0|1:245:32	0|1
9	212	.	CAAA	C	1792	PASS	DP=32	GT:GQ:DP	0|1:245:32	0|1
9	222	.	GA	G	628	q10	DP=21	GT:GQ:DP	0|1:21:21	0|1
9	232	.	G	T	1016	PASS	DP=22	GT:GQ:DP	0|1:212:22	0|1
9	232	.	GAA	GG	1016	PASS	DP=22	GT:GQ:DP	0|1:212:22	0|1
9	242	.	GT	G	727	PASS	DP=30	GT:GQ:DP	0|1:150:30	0|1
9	252	.	TAAAA	TA,T	246	PASS	DP=10	GT:GQ:DP	0|1:12:10	0|1
9	262	.	TAAAA	TA,T	246	PASS	DP=10	GT:GQ:DP	0|1:12:10	0|1
1	100	.	GTTT	G	1806	q10	DP=35	GT:GQ:DP	0|1:409:35	0|1
1	110	.	C	T,G	1792	PASS	DP=32	GT:GQ:DP	0|1:245:32	0|1
1	110	.	CAAA	C	1792	PASS	DP=32	GT:GQ:DP	0|1:245:32	0|1
1	120	.	GA	G	628	q10	DP=21	GT:GQ:DP	0|1:21:21	0|1
1	130	.	G	T	1016	PASS	DP=22	GT:GQ:DP	0|1:212:22	0|1
1	130	.	GAA	GG	1016	PASS	DP=22	GT:GQ:DP	0|1:212:22	0|1
1	140	.	GT	G	727	PASS	DP=30	GT:GQ:DP	0|1:150:30	0|1
1	150	.	TAAAA	TA,T	246	PASS	DP=10	GT:GQ:DP	0|1:12:10	0|1
1	160	.	TAAAA	TA,T	246	PASS	DP=10	GT:GQ:DP	0|1:12:10	0|1