Mercurial > repos > jjohnson > bcftools_plugin_missing2ref

view test-data/annotate3.vcf @ 0:ff65d6e0809b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
author jjohnson
date Sat, 25 Jun 2016 20:51:04 -0400
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##fileformat=VCFv4.1
##FILTER=<ID=PASS,Description="All filters passed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Genotype LK">
##FORMAT=<ID=X,Number=1,Type=Integer,Description="rmme">
##FORMAT=<ID=Y,Number=1,Type=Integer,Description="rmme">
##FORMAT=<ID=AA,Number=1,Type=Integer,Description="rmme">
##INFO=<ID=AA,Number=1,Type=Integer,Description="rmme">
##INFO=<ID=BB,Number=1,Type=Integer,Description="rmme">
##INFO=<ID=X,Number=1,Type=Integer,Description="rmme">
##INFO=<ID=Y,Number=1,Type=Integer,Description="rmme">
##FILTER=<ID=fltA,Description="rmme">
##FILTER=<ID=fltB,Description="rmme">
##FILTER=<ID=fltX,Description="rmme">
##FILTER=<ID=fltY,Description="rmme">
##contig=<ID=1,assembly=b37,length=249250621>
##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A	B
1	3000000	id	C	.	20	.	AA=1;BB=2;X=3;Y=4	GT:X:PL:Y:AA	0/1:1:2:3:1	0/1:1:2:3:1
1	3000001	id	C	.	20	PASS	AA=1;BB=2;X=3;Y=4	GT:X:PL:Y:AA	0/1:1:2:3:1	0/1:1:2:3:1
1	3000002	id	C	.	20	fltY;fltA;fltB;fltX	BB=2;X=3;Y=4;AA=1	GT:Y:X:PL:AA	0/1:3:1:2:1	0/1:3:1:2:1