Mercurial > repos > jjohnson > bcftools_plugin_missing2ref
diff test-data/annots2.vcf @ 0:ff65d6e0809b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
| author | jjohnson |
|---|---|
| date | Sat, 25 Jun 2016 20:51:04 -0400 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/annots2.vcf Sat Jun 25 20:51:04 2016 -0400 @@ -0,0 +1,17 @@ +##fileformat=VCFv4.1 +##FILTER=<ID=q99,Description="Quality below 10"> +##contig=<ID=1,assembly=b37,length=249250621> +##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta +##INFO=<ID=FLAG,Number=0,Type=Flag,Description="Test type"> +##INFO=<ID=IINT,Number=.,Type=Integer,Description="Test type"> +##INFO=<ID=IFLT,Number=.,Type=Float,Description="Test type"> +##INFO=<ID=ISTR,Number=.,Type=String,Description="Test type"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##FORMAT=<ID=FINT,Number=.,Type=Integer,Description="Test type"> +##FORMAT=<ID=FFLT,Number=.,Type=Float,Description="Test type"> +##FORMAT=<ID=FSTR,Number=.,Type=String,Description="Test type"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT B A +1 3000001 . C T . . . GT . . +1 3000002 id C T 99 q99 FLAG;IINT=88,99;IFLT=8.8,9.9;ISTR=888,999 GT:FINT:FFLT:FSTR 1|1:88,99:8.8,9.9:888,999 0|1:77:7.7:77 +1 3000003 id C T 99 q99 FLAG;IINT=88,99;IFLT=8.8,9.9;ISTR=888,999 GT:FINT:FFLT:FSTR 1|1:88,99:8.8,9.9:888,999 0|1:77:7.7:77 +1 3000004 id C T 99 q99 FLAG;IINT=88,99;IFLT=8.8,9.9;ISTR=888,999 GT:FINT:FFLT:FSTR 1|1:88,99:8.8,9.9:888,999 0|1:77:7.7:77