Mercurial > repos > jjohnson > bcftools_plugin_impute_info
comparison test-data/merge.3.a.vcf @ 0:8dcc53e60847 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
author | jjohnson |
---|---|
date | Sat, 25 Jun 2016 20:50:37 -0400 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:8dcc53e60847 |
---|---|
1 ##fileformat=VCFv4.1 | |
2 ##INFO=<ID=TEST,Number=1,Type=Integer,Description="Testing Tag"> | |
3 ##FORMAT=<ID=TT,Number=A,Type=Integer,Description="Testing Tag, with commas and \"escapes\" and escaped escapes combined with \\\"quotes\\\\\""> | |
4 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases"> | |
5 ##INFO=<ID=TR,Number=R,Type=Float,Description="Test tag"> | |
6 ##INFO=<ID=TA,Number=A,Type=Float,Description="Test tag"> | |
7 ##INFO=<ID=TG,Number=G,Type=Float,Description="Test tag"> | |
8 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
9 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> | |
10 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> | |
11 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood"> | |
12 ##FILTER=<ID=q10,Description="Quality below 10"> | |
13 ##FILTER=<ID=test,Description="Testing filter"> | |
14 ##contig=<ID=1,assembly=b37,length=249250621> | |
15 ##contig=<ID=2,assembly=b37,length=249250621> | |
16 ##contig=<ID=3,assembly=b37,length=198022430> | |
17 ##contig=<ID=4,assembly=b37,length=191154276> | |
18 ##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta | |
19 ##readme=AAAAAA | |
20 ##readme=BBBBBB | |
21 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes"> | |
22 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> | |
23 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL."> | |
24 ##INFO=<ID=STR,Number=1,Type=String,Description="Test string type"> | |
25 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B | |
26 1 3000000 . C CCG 59.2 PASS AN=4;AC=2;TR=1,2;TA=1;TG=1,2,3 GT:GQ 0/1:245 0/1:245 |