Mercurial > repos > jjohnson > bcftools_plugin_counts
comparison test-data/concat.3.a.vcf @ 0:17b407921818 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
author | jjohnson |
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date | Sat, 25 Jun 2016 20:49:12 -0400 |
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-1:000000000000 | 0:17b407921818 |
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1 ##fileformat=VCFv4.0 | |
2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> | |
3 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
4 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> | |
5 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> | |
6 ##FILTER=<ID=q10,Description="Quality below 10"> | |
7 ##contig=<ID=9,length=62435964> | |
8 ##contig=<ID=1,length=62435964> | |
9 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B | |
10 9 202 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0|1:409:35 0|1 | |
11 9 212 . C T,G 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1 | |
12 9 212 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1 | |
13 9 222 . GA G 628 q10 DP=21 GT:GQ:DP 0|1:21:21 0|1 | |
14 9 232 . G T 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1 | |
15 9 232 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1 | |
16 9 242 . GT G 727 PASS DP=30 GT:GQ:DP 0|1:150:30 0|1 | |
17 9 252 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1 | |
18 9 262 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1 | |
19 1 100 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0|1:409:35 0|1 | |
20 1 110 . C T,G 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1 | |
21 1 110 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1 | |
22 1 120 . GA G 628 q10 DP=21 GT:GQ:DP 0|1:21:21 0|1 | |
23 1 130 . G T 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1 | |
24 1 130 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1 | |
25 1 140 . GT G 727 PASS DP=30 GT:GQ:DP 0|1:150:30 0|1 | |
26 1 150 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1 | |
27 1 160 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1 |