Mercurial > repos > jjohnson > bcftools_plugin_counts
comparison test-data/annotate3.vcf @ 0:17b407921818 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
| author | jjohnson |
|---|---|
| date | Sat, 25 Jun 2016 20:49:12 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:17b407921818 |
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| 1 ##fileformat=VCFv4.1 | |
| 2 ##FILTER=<ID=PASS,Description="All filters passed"> | |
| 3 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
| 4 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Genotype LK"> | |
| 5 ##FORMAT=<ID=X,Number=1,Type=Integer,Description="rmme"> | |
| 6 ##FORMAT=<ID=Y,Number=1,Type=Integer,Description="rmme"> | |
| 7 ##FORMAT=<ID=AA,Number=1,Type=Integer,Description="rmme"> | |
| 8 ##INFO=<ID=AA,Number=1,Type=Integer,Description="rmme"> | |
| 9 ##INFO=<ID=BB,Number=1,Type=Integer,Description="rmme"> | |
| 10 ##INFO=<ID=X,Number=1,Type=Integer,Description="rmme"> | |
| 11 ##INFO=<ID=Y,Number=1,Type=Integer,Description="rmme"> | |
| 12 ##FILTER=<ID=fltA,Description="rmme"> | |
| 13 ##FILTER=<ID=fltB,Description="rmme"> | |
| 14 ##FILTER=<ID=fltX,Description="rmme"> | |
| 15 ##FILTER=<ID=fltY,Description="rmme"> | |
| 16 ##contig=<ID=1,assembly=b37,length=249250621> | |
| 17 ##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta | |
| 18 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B | |
| 19 1 3000000 id C . 20 . AA=1;BB=2;X=3;Y=4 GT:X:PL:Y:AA 0/1:1:2:3:1 0/1:1:2:3:1 | |
| 20 1 3000001 id C . 20 PASS AA=1;BB=2;X=3;Y=4 GT:X:PL:Y:AA 0/1:1:2:3:1 0/1:1:2:3:1 | |
| 21 1 3000002 id C . 20 fltY;fltA;fltB;fltX BB=2;X=3;Y=4;AA=1 GT:Y:X:PL:AA 0/1:3:1:2:1 0/1:3:1:2:1 |