Mercurial > repos > jjohnson > bcftools_filter
comparison bcftools_filter.xml @ 1:201536a80600 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
| author | jjohnson |
|---|---|
| date | Sun, 26 Jun 2016 15:34:31 -0400 |
| parents | 442f9d982db3 |
| children |
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| 0:442f9d982db3 | 1:201536a80600 |
|---|---|
| 163 </test> | 163 </test> |
| 164 <test> | 164 <test> |
| 165 <param name="input_file" ftype="vcf" value="filter.3.vcf" /> | 165 <param name="input_file" ftype="vcf" value="filter.3.vcf" /> |
| 166 <param name="exclude" value="DP=19" /> | 166 <param name="exclude" value="DP=19" /> |
| 167 <param name="soft_filter" value="XX" /> | 167 <param name="soft_filter" value="XX" /> |
| 168 <param name="mode" value="\+x" /> | 168 <param name="mode" value="+x" /> |
| 169 <param name="output_type" value="v" /> | 169 <param name="output_type" value="v" /> |
| 170 <output name="output_file"> | 170 <output name="output_file"> |
| 171 <assert_contents> | 171 <assert_contents> |
| 172 <has_text_matching expression="\tq20;XX\tDP=19" /> | 172 <has_text_matching expression="\tq20;XX\tDP=19" /> |
| 173 <has_text_matching expression="\tPASS\tAO" /> | 173 <has_text_matching expression="\tPASS\tAO" /> |