Mercurial > repos > jjohnson > bcftools_convert_to_vcf
diff test-data/concat.3.a.vcf @ 0:bca07db8f55c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
| author | jjohnson |
|---|---|
| date | Sat, 25 Jun 2016 20:47:33 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/concat.3.a.vcf Sat Jun 25 20:47:33 2016 -0400 @@ -0,0 +1,27 @@ +##fileformat=VCFv4.0 +##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> +##FILTER=<ID=q10,Description="Quality below 10"> +##contig=<ID=9,length=62435964> +##contig=<ID=1,length=62435964> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B +9 202 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0|1:409:35 0|1 +9 212 . C T,G 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1 +9 212 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1 +9 222 . GA G 628 q10 DP=21 GT:GQ:DP 0|1:21:21 0|1 +9 232 . G T 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1 +9 232 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1 +9 242 . GT G 727 PASS DP=30 GT:GQ:DP 0|1:150:30 0|1 +9 252 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1 +9 262 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1 +1 100 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0|1:409:35 0|1 +1 110 . C T,G 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1 +1 110 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1 +1 120 . GA G 628 q10 DP=21 GT:GQ:DP 0|1:21:21 0|1 +1 130 . G T 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1 +1 130 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1 +1 140 . GT G 727 PASS DP=30 GT:GQ:DP 0|1:150:30 0|1 +1 150 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1 +1 160 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1