Mercurial > repos > jjohnson > bcftools_convert_to_vcf
comparison test-data/merge.2.b.vcf @ 0:bca07db8f55c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
| author | jjohnson |
|---|---|
| date | Sat, 25 Jun 2016 20:47:33 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:bca07db8f55c |
|---|---|
| 1 ##fileformat=VCFv4.1 | |
| 2 ##INFO=<ID=TEST,Number=1,Type=Integer,Description="Testing Tag"> | |
| 3 ##FORMAT=<ID=TT,Number=A,Type=Integer,Description="Testing Tag, with commas and \"escapes\" and escaped escapes combined with \\\"quotes\\\\\""> | |
| 4 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases"> | |
| 5 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
| 6 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> | |
| 7 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> | |
| 8 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood"> | |
| 9 ##FILTER=<ID=q10,Description="Quality below 10"> | |
| 10 ##FILTER=<ID=test,Description="Testing filter"> | |
| 11 ##contig=<ID=1,assembly=b37,length=249250621> | |
| 12 ##contig=<ID=2,assembly=b37,length=249250621> | |
| 13 ##contig=<ID=3,assembly=b37,length=198022430> | |
| 14 ##contig=<ID=4,assembly=b37,length=191154276> | |
| 15 ##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta | |
| 16 ##readme=AAAAAA | |
| 17 ##readme=BBBBBB | |
| 18 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes"> | |
| 19 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> | |
| 20 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL."> | |
| 21 ##INFO=<ID=STR,Number=1,Type=String,Description="Test string type"> | |
| 22 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B | |
| 23 1 3000000 . C G 59.2 PASS AN=4;AC=2 GT:GQ 0/1:245 0/1:245 | |
| 24 1 3000150 . C G 59.2 PASS AN=4;AC=2 GT:GQ 0/1:245 0/1:245 | |
| 25 1 3000151 . C G 59.2 PASS AN=4;AC=2 GT:DP:GQ 0/1:32:245 0/1:32:245 | |
| 26 1 3106154 . C CCC 342 PASS AN=4;AC=2 GT:GQ:DP 0/1:245:32 0/1:245:32 | |
| 27 1 3106154 . C T 59.2 PASS AN=4;AC=2 GT:GQ:DP 0/1:245:32 0/1:245:32 | |
| 28 1 3200000 . C T 59.2 PASS AN=4;AC=2 GT:GQ:DP 0/1:245:32 0/1:245:32 | |
| 29 1 3200010 . c A,T 59.2 PASS AN=4;AC=2 GT:GQ:DP 0/1:245:32 0/1:245:32 | |
| 30 1 3200020 . C T,G 59.2 PASS AN=4;AC=2 GT:GL ./.:1,4,6,2,5,3 .:1,3,2 |