Mercurial > repos > jjohnson > bcftools_convert_from_vcf
diff test-data/merge.4.b.vcf @ 0:d396503fdbdb draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
| author | jjohnson |
|---|---|
| date | Sat, 25 Jun 2016 20:47:20 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/merge.4.b.vcf Sat Jun 25 20:47:20 2016 -0400 @@ -0,0 +1,33 @@ +##fileformat=VCFv4.1 +##INFO=<ID=TEST,Number=1,Type=Integer,Description="Testing Tag"> +##FORMAT=<ID=TT,Number=A,Type=Integer,Description="Testing Tag, with commas and \"escapes\" and escaped escapes combined with \\\"quotes\\\\\""> +##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases"> +##INFO=<ID=TR,Number=R,Type=Float,Description="Test tag"> +##INFO=<ID=TA,Number=A,Type=Float,Description="Test tag"> +##INFO=<ID=TG,Number=G,Type=Float,Description="Test tag"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> +##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood"> +##FORMAT=<ID=XR,Number=R,Type=Integer,Description="Some description"> +##FORMAT=<ID=XA,Number=A,Type=Integer,Description="Some description"> +##FORMAT=<ID=XG,Number=G,Type=Integer,Description="Some description"> +##FILTER=<ID=q10,Description="Quality below 10"> +##FILTER=<ID=test,Description="Testing filter"> +##contig=<ID=1,assembly=b37,length=249250621> +##contig=<ID=2,assembly=b37,length=249250621> +##contig=<ID=3,assembly=b37,length=198022430> +##contig=<ID=4,assembly=b37,length=191154276> +##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta +##readme=AAAAAA +##readme=BBBBBB +##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes"> +##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> +##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL."> +##INFO=<ID=STR,Number=1,Type=String,Description="Test string type"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT C D +1 3000000 . C A 59.2 PASS AN=4;AC=2 GT:GQ 0/1:245 0/1:245 +1 3000000 id1 C A 59.2 PASS AN=4;AC=2;TR=1,2;TA=1;TG=1,2,3 GT:GQ:XR:XG:XA 0/1:245:4,5:3,4,5:5 0/1:245:6,7:6,7,8:7 +1 3000002 id3 C A 59.2 PASS AN=4;AC=2;TR=1,2;TA=1;TG=1,2,3 GT:GQ:XR:XG:XA 0/1:245:. 0/1:245:1,2:1,2,3:2 +1 3000002 id2 C A 59.2 PASS AN=4;AC=2;TR=1,2;TA=1;TG=1,2,3 GT:GQ:XR:XG:XA 0/1:245:. 0/1:245:.:.:. +1 3000002 . C A 59.2 PASS AN=4;AC=2 GT:GQ 0/1:245 0/1:245