Mercurial > repos > jjohnson > bcftools_convert_from_vcf

diff test-data/concat.2.a.vcf @ 0:d396503fdbdb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
author jjohnson
date Sat, 25 Jun 2016 20:47:20 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/concat.2.a.vcf	Sat Jun 25 20:47:20 2016 -0400
@@ -0,0 +1,15 @@
+##fileformat=VCFv4.0
+##INFO=<ID=XX,Number=1,Type=Integer,Description="Test">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FILTER=<ID=Fail,Description="Fail">
+##contig=<ID=1,length=62435964>
+##contig=<ID=2,length=62435964>
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A
+2	140	.	A	G	727	PASS	DP=30	GT:GQ:DP	0/1:150:30
+2	160	.	TAAAA	TA,TC,T	246	PASS	DP=10	GT:GQ:DP	0/2:12:10
+1	110	.	C	T,G	1792	Fail	XX=11;DP=32	GT:GQ:DP	0/1:245:32
+1	130	.	GAA	GG	1016	PASS	DP=22	GT:GQ:DP	0/1:212:22
+1	130	.	G	T	1016	PASS	DP=22	GT:GQ:DP	0/1:212:22