Mercurial > repos > jjohnson > bcftools_convert_from_vcf
diff test-data/annotate3.vcf @ 0:d396503fdbdb draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
| author | jjohnson |
|---|---|
| date | Sat, 25 Jun 2016 20:47:20 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/annotate3.vcf Sat Jun 25 20:47:20 2016 -0400 @@ -0,0 +1,21 @@ +##fileformat=VCFv4.1 +##FILTER=<ID=PASS,Description="All filters passed"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Genotype LK"> +##FORMAT=<ID=X,Number=1,Type=Integer,Description="rmme"> +##FORMAT=<ID=Y,Number=1,Type=Integer,Description="rmme"> +##FORMAT=<ID=AA,Number=1,Type=Integer,Description="rmme"> +##INFO=<ID=AA,Number=1,Type=Integer,Description="rmme"> +##INFO=<ID=BB,Number=1,Type=Integer,Description="rmme"> +##INFO=<ID=X,Number=1,Type=Integer,Description="rmme"> +##INFO=<ID=Y,Number=1,Type=Integer,Description="rmme"> +##FILTER=<ID=fltA,Description="rmme"> +##FILTER=<ID=fltB,Description="rmme"> +##FILTER=<ID=fltX,Description="rmme"> +##FILTER=<ID=fltY,Description="rmme"> +##contig=<ID=1,assembly=b37,length=249250621> +##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B +1 3000000 id C . 20 . AA=1;BB=2;X=3;Y=4 GT:X:PL:Y:AA 0/1:1:2:3:1 0/1:1:2:3:1 +1 3000001 id C . 20 PASS AA=1;BB=2;X=3;Y=4 GT:X:PL:Y:AA 0/1:1:2:3:1 0/1:1:2:3:1 +1 3000002 id C . 20 fltY;fltA;fltB;fltX BB=2;X=3;Y=4;AA=1 GT:Y:X:PL:AA 0/1:3:1:2:1 0/1:3:1:2:1