Mercurial > repos > jjohnson > bcftools_convert_from_vcf

annotate test-data/concat.3.f.vcf @ 1:00c4dab57376 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
author jjohnson
date Sun, 26 Jun 2016 15:33:34 -0400
parents d396503fdbdb
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
1 ##fileformat=VCFv4.0
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
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2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
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3 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
4 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
5 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
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6 ##FILTER=<ID=q10,Description="Quality below 10">
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
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7 ##contig=<ID=3,length=62435964>
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
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8 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
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9 3 380 . T A 246 PASS DP=10 GT 1|0 1|0
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
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10 3 390 . T A 246 PASS DP=10 GT 1|0 1|0
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
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11 3 400 . T A 246 PASS DP=10 GT 1|0 1|0
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
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12 3 410 . T A 246 PASS DP=10 GT 1|0 1|0
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
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13 3 420 . T A 246 PASS DP=10 GT 1|0 1|0
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
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14 3 430 . T A 246 PASS DP=10 GT 1|0 1|0
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
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15 3 440 . T A 246 PASS DP=10 GT 1|0 1|0
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
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16 3 450 . T A 246 PASS DP=10 GT 1|0 1|0
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
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17 3 460 . T A 246 PASS DP=10 GT 1|0 1|0
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
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18 3 470 . T A 246 PASS DP=10 GT 1|0 1|0
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
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19 3 480 . T A 246 PASS DP=10 GT 1|0 1|0
d396503fdbdb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
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20 3 490 . T A 246 PASS DP=10 GT 1|0 1|0