Mercurial > repos > jjohnson > bcftools_call
diff test-data/concat.1.b.vcf @ 0:20b3aaa16d64 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
| author | jjohnson |
|---|---|
| date | Sat, 25 Jun 2016 20:46:24 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/concat.1.b.vcf Sat Jun 25 20:46:24 2016 -0400 @@ -0,0 +1,19 @@ +##fileformat=VCFv4.0 +##samtoolsVersion=0.2.0-rc10+htslib-0.2.0-rc10 +##samtoolsCommand=samtools mpileup -t INFO/DPR -C50 -pm3 -F0.2 -d10000 -ug -r 1:1-1000000 -b mpileup.2014-07-03//lists/chr1-pooled.list -f human_g1k_v37.fasta +##ALT=<ID=X,Description="Represents allele(s) other than observed."> +##bcftools_callVersion=0.2.0-rc10-2-gcd94fde+htslib-0.2.0-rc10 +##bcftools_callCommand=call -vm -f GQ -S mpileup.2014-07-03//pooled/1/1:1-1000000.samples - +##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> +##FILTER=<ID=q10,Description="Quality below 10"> +##contig=<ID=3,length=62435964> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A +3 142 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0/1:409:35 +3 152 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0/1:245:32 +3 162 . GA G 628 q10 DP=21 GT:GQ:DP 1/1:21:21 +3 172 . GAA G 1016 PASS DP=22 GT:GQ:DP 0/1:212:22 +3 182 . GT G 727 PASS DP=30 GT:GQ:DP 0/1:150:30 +3 192 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 1/2:12:10