Mercurial > repos > jjohnson > bcftools_call
comparison test-data/merge.4.a.vcf @ 0:20b3aaa16d64 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
| author | jjohnson |
|---|---|
| date | Sat, 25 Jun 2016 20:46:24 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:20b3aaa16d64 |
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| 1 ##fileformat=VCFv4.1 | |
| 2 ##INFO=<ID=TEST,Number=1,Type=Integer,Description="Testing Tag"> | |
| 3 ##FORMAT=<ID=TT,Number=A,Type=Integer,Description="Testing Tag, with commas and \"escapes\" and escaped escapes combined with \\\"quotes\\\\\""> | |
| 4 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases"> | |
| 5 ##INFO=<ID=TR,Number=R,Type=Float,Description="Test tag"> | |
| 6 ##INFO=<ID=TA,Number=A,Type=Float,Description="Test tag"> | |
| 7 ##INFO=<ID=TG,Number=G,Type=Float,Description="Test tag"> | |
| 8 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
| 9 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> | |
| 10 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> | |
| 11 ##FORMAT=<ID=XR,Number=R,Type=Integer,Description="Some description"> | |
| 12 ##FORMAT=<ID=XA,Number=A,Type=Integer,Description="Some description"> | |
| 13 ##FORMAT=<ID=XG,Number=G,Type=Integer,Description="Some description"> | |
| 14 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood"> | |
| 15 ##FILTER=<ID=q10,Description="Quality below 10"> | |
| 16 ##FILTER=<ID=test,Description="Testing filter"> | |
| 17 ##contig=<ID=1,assembly=b37,length=249250621> | |
| 18 ##contig=<ID=2,assembly=b37,length=249250621> | |
| 19 ##contig=<ID=3,assembly=b37,length=198022430> | |
| 20 ##contig=<ID=4,assembly=b37,length=191154276> | |
| 21 ##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta | |
| 22 ##readme=AAAAAA | |
| 23 ##readme=BBBBBB | |
| 24 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes"> | |
| 25 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> | |
| 26 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL."> | |
| 27 ##INFO=<ID=STR,Number=1,Type=String,Description="Test string type"> | |
| 28 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B | |
| 29 1 3000000 id1 C CCG 59.2 PASS AN=4;AC=2;TR=1,2;TA=1;TG=1,2,3 GT:GQ:XR:XA:XG 0/1:245:0,1:1:0,1,2 0/1:245:1,2:2:0,1,2 | |
| 30 1 3000000 . C CCG 59.2 PASS AN=4;AC=2 GT:GQ:XR:XA:XG 0/1:245:1,2:2:0,1,2 0/1:245:2,3:3:1,2,3 | |
| 31 1 3000002 . C CCG 59.2 PASS AN=4;AC=2 GT:GQ 0/1:245 0/1:245 | |
| 32 1 3000002 id2 C CCG 59.2 PASS AN=4;AC=2;TR=1,2;TA=1;TG=1,2,3 GT:GL:XR:XA:XG 0/1:245:.:.:. 0/1:245:.:.:. | |
| 33 1 3000002 id3 C CCG 59.2 PASS AN=4;AC=2;TR=1,2;TA=1;TG=1,2,3 GT:GL:XR:XA:XG 0/1:245:.:.:. 0/1:245:. |