Mercurial > repos > jjohnson > augustus_dep

changeset 8:8efa8a337565 draft default tip

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tool_dependencies.xml - try download_by_url
author Jim Johnson <jj@umn.edu>
date Thu, 25 Oct 2012 15:49:37 -0500
parents bf047bff79df
children
files tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Oct 24 11:15:10 2012 -0500
+++ b/tool_dependencies.xml	Thu Oct 25 15:49:37 2012 -0500
@@ -3,10 +3,8 @@
     <package name="augustus" version="2.6.1">
         <install version="1.0">
             <actions>
-                <action type="shell_command">mkdir augustus</action>
                 <!-- the first command puts us in the dir for the package name: "augustus"-->
-                <action type="shell_command">wget --quiet http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action>
-                <action type="shell_command">tar zxf augustus.2.6.1.tar.gz</action>
+                <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action>
                 <action type="shell_command">make</action>
                 <action type="move_directory_files">
                     <source_directory>bin</source_directory>
@@ -34,4 +32,3 @@
         <readme>http://augustus.gobics.de/binaries/README.TXT</readme>
     </package>
 </tool_dependency>
-