# HG changeset patch # User Jim Johnson <jj@umn.edu> # Date 1351009998 18000 # Node ID 6d288b228c6d1147dfda375bbfa6e2c797038b0f # Parent 06b5da1079d878aa1d2425f23575cb1ed965baf3 tool_dependecy debugging diff -r 06b5da1079d8 -r 6d288b228c6d tool_dependencies.xml --- a/tool_dependencies.xml Tue Oct 23 10:07:28 2012 -0500 +++ b/tool_dependencies.xml Tue Oct 23 11:33:18 2012 -0500 @@ -5,6 +5,7 @@ <actions> <action type="shell_command">wget http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action> <!-- with the first command of with type shell_command a dir will be created with the package name, and we'll operate from there. --> + <action type="shell_command">pwd</action> <action type="shell_command">tar zxf ../augustus.2.6.1.tar.gz</action> <action type="shell_command">make</action> <action type="move_directory_files">