# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1351004848 18000
# Node ID 06b5da1079d878aa1d2425f23575cb1ed965baf3
# Parent  75675bc1aafb59c8c7c46366e1f8137be9d6df1b
Revise tool_dependencies.xml to handle augustus.2.6.1 being packaged in current dir

diff -r 75675bc1aafb -r 06b5da1079d8 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Oct 23 09:05:09 2012 -0500
+++ b/tool_dependencies.xml	Tue Oct 23 10:07:28 2012 -0500
@@ -3,7 +3,9 @@
     <package name="augustus" version="2.6.1">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action>
+                <action type="shell_command">wget http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action>
+                <!-- with the first command of with type shell_command a dir will be created with the package name, and we'll operate from there. -->
+                <action type="shell_command">tar zxf ../augustus.2.6.1.tar.gz</action>
                 <action type="shell_command">make</action>
                 <action type="move_directory_files">
                     <source_directory>bin</source_directory>