Mercurial > repos > jjohnson > augustus_dep

diff tool_dependencies.xml @ 6:fb61d175ab99 draft

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Fix tool_dependencies.xml install.
author Jim Johnson <jj@umn.edu>
date Wed, 24 Oct 2012 11:08:05 -0500
parents 6d288b228c6d
children bf047bff79df
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Oct 23 11:33:18 2012 -0500
+++ b/tool_dependencies.xml	Wed Oct 24 11:08:05 2012 -0500
@@ -3,9 +3,9 @@
     <package name="augustus" version="2.6.1">
         <install version="1.0">
             <actions>
-                <action type="shell_command">wget http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action>
-                <!-- with the first command of with type shell_command a dir will be created with the package name, and we'll operate from there. -->
-                <action type="shell_command">pwd</action>
+                <action type="shell_command">mkdir augustus</action>
+                <!-- the first command puts us in the dir for the package name: "augustus"-->
+                <action type="shell_command">wget --quiet http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action>
                 <action type="shell_command">tar zxf ../augustus.2.6.1.tar.gz</action>
                 <action type="shell_command">make</action>
                 <action type="move_directory_files">