Mercurial > repos > jjohnson > augustus_dep

diff tool_dependencies.xml @ 5:6d288b228c6d draft

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tool_dependecy debugging
author Jim Johnson <jj@umn.edu>
date Tue, 23 Oct 2012 11:33:18 -0500
parents 06b5da1079d8
children fb61d175ab99
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Oct 23 10:07:28 2012 -0500
+++ b/tool_dependencies.xml	Tue Oct 23 11:33:18 2012 -0500
@@ -5,6 +5,7 @@
             <actions>
                 <action type="shell_command">wget http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action>
                 <!-- with the first command of with type shell_command a dir will be created with the package name, and we'll operate from there. -->
+                <action type="shell_command">pwd</action>
                 <action type="shell_command">tar zxf ../augustus.2.6.1.tar.gz</action>
                 <action type="shell_command">make</action>
                 <action type="move_directory_files">