Mercurial > repos > jjohnson > augustus_dep

diff tool_dependencies.xml @ 4:06b5da1079d8 draft

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Revise tool_dependencies.xml to handle augustus.2.6.1 being packaged in current dir
author Jim Johnson <jj@umn.edu>
date Tue, 23 Oct 2012 10:07:28 -0500
parents 75675bc1aafb
children 6d288b228c6d
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Oct 23 09:05:09 2012 -0500
+++ b/tool_dependencies.xml	Tue Oct 23 10:07:28 2012 -0500
@@ -3,7 +3,9 @@
     <package name="augustus" version="2.6.1">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action>
+                <action type="shell_command">wget http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action>
+                <!-- with the first command of with type shell_command a dir will be created with the package name, and we'll operate from there. -->
+                <action type="shell_command">tar zxf ../augustus.2.6.1.tar.gz</action>
                 <action type="shell_command">make</action>
                 <action type="move_directory_files">
                     <source_directory>bin</source_directory>