Mercurial > repos > jjohnson > augustus_dep
comparison tool_dependencies.xml @ 3:75675bc1aafb draft
Upgrade to augustus version 2.6.1
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 23 Oct 2012 09:05:09 -0500 |
| parents | d088c697396d |
| children | 06b5da1079d8 |
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| 2:d088c697396d | 3:75675bc1aafb |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="augustus" version="2.5.5"> | 3 <package name="augustus" version="2.6.1"> |
| 4 <install version="1.0"> | 4 <install version="1.0"> |
| 5 <actions> | 5 <actions> |
| 6 <action type="download_by_url">http://augustus.gobics.de/binaries/augustus.2.5.5.tar.gz</action> | 6 <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action> |
| 7 <action type="shell_command">make</action> | 7 <action type="shell_command">make</action> |
| 8 <action type="move_directory_files"> | 8 <action type="move_directory_files"> |
| 9 <source_directory>bin</source_directory> | 9 <source_directory>bin</source_directory> |
| 10 <destination_directory>$INSTALL_DIR/bin</destination_directory> | 10 <destination_directory>$INSTALL_DIR/bin</destination_directory> |
| 11 </action> | 11 </action> |
| 16 <action type="move_directory_files"> | 16 <action type="move_directory_files"> |
| 17 <source_directory>config</source_directory> | 17 <source_directory>config</source_directory> |
| 18 <destination_directory>$INSTALL_DIR/config</destination_directory> | 18 <destination_directory>$INSTALL_DIR/config</destination_directory> |
| 19 </action> | 19 </action> |
| 20 <action type="set_environment"> | 20 <action type="set_environment"> |
| 21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable> | |
| 22 </action> | |
| 23 <action type="set_environment"> | |
| 21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | 24 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 22 </action> | 25 </action> |
| 23 <action type="set_environment"> | 26 <action type="set_environment"> |
| 24 <environment_variable name="AUGUSTUS_CONFIG_PATH" action="set_to">$INSTALL_DIR/config</environment_variable> | 27 <environment_variable name="AUGUSTUS_CONFIG_PATH" action="set_to">$INSTALL_DIR/config</environment_variable> |
| 25 </action> | 28 </action> |