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annotate tool_dependencies.xml @ 7:bf047bff79df draft

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Fix tool_dependencies.xml install.
author Jim Johnson <jj@umn.edu>
date Wed, 24 Oct 2012 11:15:10 -0500
parents fb61d175ab99
children 8efa8a337565
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="augustus" version="2.6.1">
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4 <install version="1.0">
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5 <actions>
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6 <action type="shell_command">mkdir augustus</action>
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7 <!-- the first command puts us in the dir for the package name: "augustus"-->
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8 <action type="shell_command">wget --quiet http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action>
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9 <action type="shell_command">tar zxf augustus.2.6.1.tar.gz</action>
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10 <action type="shell_command">make</action>
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11 <action type="move_directory_files">
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12 <source_directory>bin</source_directory>
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13 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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14 </action>
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15 <action type="move_directory_files">
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16 <source_directory>scripts</source_directory>
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17 <destination_directory>$INSTALL_DIR/scripts</destination_directory>
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18 </action>
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19 <action type="move_directory_files">
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20 <source_directory>config</source_directory>
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21 <destination_directory>$INSTALL_DIR/config</destination_directory>
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22 </action>
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23 <action type="set_environment">
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24 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
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25 </action>
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26 <action type="set_environment">
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27 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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28 </action>
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29 <action type="set_environment">
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30 <environment_variable name="AUGUSTUS_CONFIG_PATH" action="set_to">$INSTALL_DIR/config</environment_variable>
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31 </action>
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32 </actions>
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33 </install>
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34 <readme>http://augustus.gobics.de/binaries/README.TXT</readme>
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35 </package>
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36 </tool_dependency>
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