# HG changeset patch
# User jfb
# Date 1527103512 14400
# Node ID 108605ff951df1a1ccdf578fb287fdc2412f3644
# Parent  8931bea806a6d6ebb948f9ba93caa23299eed0a0
Uploaded

diff -r 8931bea806a6 -r 108605ff951d C and D finder/CandD.xml
--- a/C and D finder/CandD.xml	Wed May 23 15:07:26 2018 -0400
+++ b/C and D finder/CandD.xml	Wed May 23 15:25:12 2018 -0400
@@ -4,15 +4,22 @@
        <requirement type="package">R</requirement>
     </requirements>
     <command><![CDATA[
+		ln -s '$input1' input1.csv &&
+		ln -s '$input2' input2.csv &&
+		ln -s '$input3' input3.csv &&
+		ln -s '$input4' input4.csv &&
+		ln -s '$input5' input5.csv &&
+		ln -s '$input6' input6.csv &&
+		
 		Rscript '$__tool_directory__/CandD.R' NO NO YES
     ]]></command>
     <inputs>
-		<param format="csv" name="input1.csv" type="data" label="First Substrate Set"/>
-        <param format="csv" name="input2.csv" type="data" label="First Substrate Background Frequency"/>
-		<param format="csv" name="input3.csv" type="data" label="Second Substrate Set"/>
-		<param format="csv" name="input4.csv" type="data" label="Second Substrate Background Frequency"/>
-		<param format="csv" name="input5.csv" type="data" label="Third Substrate Set"/>
-		<param format="csv" name="input6.csv" type="data" label="Third Substrate Background Frequency"/>
+		<param format="csv" name="input1" type="data" label="First Substrate Set"/>
+        <param format="csv" name="input2" type="data" label="First Substrate Background Frequency"/>
+		<param format="csv" name="input3" type="data" label="Second Substrate Set"/>
+		<param format="csv" name="input4" type="data" label="Second Substrate Background Frequency"/>
+		<param format="csv" name="input5" type="data" label="Third Substrate Set"/>
+		<param format="csv" name="input6" type="data" label="Third Substrate Background Frequency"/>
 		<param name="outGroup" type="text" value="kinase" label="Kinase Name"/>
     </inputs>      
     <outputs>