# HG changeset patch
# User jfb
# Date 1527029010 14400
# Node ID ac16c0cefedb246f1958a7d768a01b12d8f3957e
# Parent  d7cedf66014a34b3ee697d76d0fc22dfb2e1f22e
Uploaded

diff -r d7cedf66014a -r ac16c0cefedb C and D finder/CandD.xml
--- a/C and D finder/CandD.xml	Tue May 22 18:17:33 2018 -0400
+++ b/C and D finder/CandD.xml	Tue May 22 18:43:30 2018 -0400
@@ -1,10 +1,10 @@
-<tool id="kinamine_java" name="Negative-Motif-Finder 7_to_7" version="1.0.0">
+<tool id="commonality_r" name="commonality_finder" version="1.0.0">
     <description>discover unphosphorylated substrates</description>
     <requirements>
        <requirement type="package">R</requirement>
     </requirements>
     <command><![CDATA[
-		Rscript '$__tool_directory__/CandD.R'
+		Rscript '$__tool_directory__/CandD.R' NO NO YES
     ]]></command>
     <inputs>
 		<param format="csv" name="input1.csv" type="data" label="First Substrate Set"/>