# HG changeset patch
# User jeremyjliu
# Date 1414264048 14400
# Node ID d281fed8ec611aec8cfd30912a66865d6a90558b
# Parent  7a3bb055f3d0e52361888de6591be645283eae75
Uploaded

diff -r 7a3bb055f3d0 -r d281fed8ec61 region_motif_intersect.xml
--- a/region_motif_intersect.xml	Fri Oct 17 13:43:27 2014 -0400
+++ b/region_motif_intersect.xml	Sat Oct 25 15:07:28 2014 -0400
@@ -1,10 +1,11 @@
 <tool id="region_motif_intersect" name="Region Motif Intersect">
   <description>for computing the motifs that lie inside a region set</description>
   <requirements>
-    <requirement type="set_environment">MOTIF_DB_PATH</requirement>
+    <requirement type="set_environment">R_SCRIPT_PATH</requirement>
+    <requirement type="package" version="2.15.1">R</requirement>
   </requirements>
   <command interpreter="Rscript">
-    region_motif_intersect.r --args $MOTIF_DB_PATH $db_type $in_bed $out_tab
+    region_motif_intersect.r --args \$R_SCRIPT_PATH $db_type $in_bed $out_tab
   </command>
   <inputs>
     <param name="in_bed" type="data" format="bed" label="Input BED File" />