view Galaxy-Workflow-Region_Motif_Count_Comparison_Mouse_Motifs.ga @ 30:da0bc6dead0d draft

Restore deleted source files
author jeremyjliu
date Mon, 05 Jan 2015 22:28:37 -0500
parents c78ebf00379d
children
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{
    "a_galaxy_workflow": "true", 
    "annotation": "{\n        \"refinery_type\": \"analysis\",\n        \"refinery_relationships\": [\n                {\n                        \"category\": \"1-1\",\n                        \"set1\": \"Region 1\",\n                        \"set2\": \"Region 2\"\n                }\n        ]\n}", 
    "format-version": "0.1", 
    "name": "Region Motif Count Comparison Mouse Motifs", 
    "steps": {
        "0": {
            "annotation": "", 
            "id": 0, 
            "input_connections": {}, 
            "inputs": [
                {
                    "description": "", 
                    "name": "Region 1"
                }
            ], 
            "name": "Input dataset", 
            "outputs": [], 
            "position": {
                "left": 201, 
                "top": 135
            }, 
            "tool_errors": null, 
            "tool_id": null, 
            "tool_state": "{\"name\": \"Region 1\"}", 
            "tool_version": null, 
            "type": "data_input", 
            "user_outputs": []
        }, 
        "1": {
            "annotation": "", 
            "id": 1, 
            "input_connections": {}, 
            "inputs": [
                {
                    "description": "", 
                    "name": "Region 2"
                }
            ], 
            "name": "Input dataset", 
            "outputs": [], 
            "position": {
                "left": 196, 
                "top": 331
            }, 
            "tool_errors": null, 
            "tool_id": null, 
            "tool_state": "{\"name\": \"Region 2\"}", 
            "tool_version": null, 
            "type": "data_input", 
            "user_outputs": []
        }, 
        "2": {
            "annotation": "{\n        \"out_tab\": {\n                \"name\": \"motifs_count_region_1\",\n                \"description\": \"Motif counts in region 1.\",\n                \"type\": \"tabular\"\n        }\n}", 
            "id": 2, 
            "input_connections": {
                "in_bed": {
                    "id": 0, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Region Motif Intersect", 
            "outputs": [
                {
                    "name": "out_tab", 
                    "type": "tabular"
                }
            ], 
            "position": {
                "left": 411, 
                "top": 122
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
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        "3": {
            "annotation": "{\n        \"out_tab\": {\n                \"name\": \"motifs_count_region_2\",\n                \"description\": \"Motif counts in region 2.\",\n                \"type\": \"tabular\"\n        }\n}", 
            "id": 3, 
            "input_connections": {
                "in_bed": {
                    "id": 1, 
                    "output_name": "output"
                }
            }, 
            "inputs": [], 
            "name": "Region Motif Intersect", 
            "outputs": [
                {
                    "name": "out_tab", 
                    "type": "tabular"
                }
            ], 
            "position": {
                "left": 408, 
                "top": 322
            }, 
            "post_job_actions": {}, 
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            "type": "tool", 
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        "4": {
            "annotation": "{\n        \"out_enriched\": {\n                \"name\": \"motifs_enriched\",\n                \"description\": \"Motifs enriched in regions 1 versus regions 2.\",\n                \"type\": \"tabular\"\n        },\n        \"out_depleted\": {\n                \"name\": \"motifs_depleted\",\n                \"description\": \"Motifs depleted in regions 1 versus regions 2.\",\n                \"type\": \"tabular\"\n        },\n       \"out_plots\": {\n                \"name\": \"motif_counts_plots\",\n                \"description\": \"Summary plots for motifs in regions 1 versus regions 2.\",\n                \"type\": \"png\"\n        }\n}", 
            "id": 4, 
            "input_connections": {
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                "in_tab_2": {
                    "id": 3, 
                    "output_name": "out_tab"
                }
            }, 
            "inputs": [], 
            "name": "Region Motif Count Compare", 
            "outputs": [
                {
                    "name": "out_enriched", 
                    "type": "tabular"
                }, 
                {
                    "name": "out_depleted", 
                    "type": "tabular"
                }, 
                {
                    "name": "out_plots", 
                    "type": "png"
                }
            ], 
            "position": {
                "left": 692.5, 
                "top": 206
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
            "tool_id": "region_motif_compare", 
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}