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view tool_dependencies.xml @ 28:c8783602cbf0 draft

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Further testing of motif db installation from file install
author jeremyjliu
date Sun, 04 Jan 2015 21:28:46 -0500
parents 42798cea9d57
children
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<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable name="RMOTIF_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>  
    </set_environment>
    <package name="MOTIFS" version="1.0.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://gehlenborg.com/wp-content/uploads/motif/pouya_test_motifs.bed.bgz</action>
                <action type="shell_command">mv pouya_test_motifs.bed.bgz $REPOSITORY_INSTALL_DIR/region_motif_db</action>
                <action type="download_by_url">http://gehlenborg.com/wp-content/uploads/motif/pouya_test_motifs.bed.bgz.tbi</action>
                <action type="shell_command">mv pouya_test_motifs.bed.bgz.tbi $REPOSITORY_INSTALL_DIR/region_motif_db</action>
            </actions>
        </install>
    </package>
</tool_dependency>