Mercurial > repos > jeremyjliu > region_motif_enrichment
view region_motif_intersect.xml @ 15:81bd3a218c51 draft
Deleted test motif database
author | jeremyjliu |
---|---|
date | Wed, 12 Nov 2014 15:10:51 -0500 |
parents | ef85d5e787d7 |
children |
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<tool id="region_motif_intersect" name="Region Motif Intersect"> <description>for computing the motifs that lie inside a region set</description> <requirements> <requirement type="set_environment">R_SCRIPT_PATH</requirement> </requirements> <command interpreter="Rscript"> region_motif_intersect.r --args \$R_SCRIPT_PATH $db_type $in_bed $out_tab </command> <inputs> <param name="in_bed" type="data" format="bed" label="Input BED File" /> <param name="db_type" type="select" label="Select Motif Database" > <option value="t">Test Pouya Subset (hg19)</option> <option value="p">Pouya Encode Motifs (hg19)</option> <option value="j">Jaspar and Jolma Motifs (hg19)</option> <option value="m">Mouse Motifs (mm9)</option> </param> </inputs> <outputs> <data name="out_tab" format="tabular" /> </outputs> <help> This tool computes the motifs and the number of motifs that intersect any region in a input set of regions. </help> </tool>