Mercurial > repos > jeremyjliu > region_motif_enrichment

diff region_motif_intersect.xml @ 6:d281fed8ec61 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jeremyjliu
date Sat, 25 Oct 2014 15:07:28 -0400
parents 5d9014614d28
children 0c1627c2f09d
line wrap: on
line diff
--- a/region_motif_intersect.xml	Fri Oct 17 13:43:27 2014 -0400
+++ b/region_motif_intersect.xml	Sat Oct 25 15:07:28 2014 -0400
@@ -1,10 +1,11 @@
 <tool id="region_motif_intersect" name="Region Motif Intersect">
   <description>for computing the motifs that lie inside a region set</description>
   <requirements>
-    <requirement type="set_environment">MOTIF_DB_PATH</requirement>
+    <requirement type="set_environment">R_SCRIPT_PATH</requirement>
+    <requirement type="package" version="2.15.1">R</requirement>
   </requirements>
   <command interpreter="Rscript">
-    region_motif_intersect.r --args $MOTIF_DB_PATH $db_type $in_bed $out_tab
+    region_motif_intersect.r --args \$R_SCRIPT_PATH $db_type $in_bed $out_tab
   </command>
   <inputs>
     <param name="in_bed" type="data" format="bed" label="Input BED File" />