Mercurial > repos > jeremyjliu > region_motif_enrichment
diff region_motif_intersect.r @ 37:76e108a19e64 draft
Uploaded
| author | jeremyjliu |
|---|---|
| date | Tue, 07 Apr 2015 23:22:43 -0400 |
| parents | b868314320e2 |
| children |
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--- a/region_motif_intersect.r Fri Mar 06 13:24:03 2015 -0500 +++ b/region_motif_intersect.r Tue Apr 07 23:22:43 2015 -0400 @@ -4,9 +4,9 @@ # Author: Jeremy Liu # Email: jeremy.liu@yale.edu # Date: 15/02/11 -# Note: This script is meant to be invoked with the following command +# Note: This script can be invoked with the following command # R --slave --vanilla -f ./region_motif_intersect.r --args <db_bgz> <db_tbi> <inbed> <outtab> -# Dependencies: region_motif_data_manager +# Dependencies: region_motif_data_manager, Rsamtools # Auxiliary function to concatenate multiple strings concat <- function(...) { @@ -33,7 +33,7 @@ # Load dependencies cat("Loading dependencies...\n") -suppressPackageStartupMessages(library(Rsamtools, quietly=TRUE)) +suppressPackageStartupMessages(library(Rsamtools, quietly=TRUE)) # NEED TO HANDLE INSTALLATION # Initializing hash table (as env) with motif names and loading tabix file cat("Loading motif database and initializing hash table...\n")