Mercurial > repos > jeremyjliu > region_motif_enrichment

diff region_motif_intersect.xml @ 35:4ce22698acb0 draft

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author jeremyjliu
date Thu, 26 Feb 2015 22:54:09 -0500
parents 0e031bf8c5b1
children aa921c733d10
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--- a/region_motif_intersect.xml	Tue Feb 10 02:03:15 2015 -0500
+++ b/region_motif_intersect.xml	Thu Feb 26 22:54:09 2015 -0500
@@ -1,8 +1,5 @@
 <tool id="region_motif_intersect" name="Region Motif Intersect">
   <description>for computing the motifs that lie inside a region set</description>
-  <!--<requirements>
-    <requirement type="package" version="1.0.0">MOTIF_DATA_MANAGER</requirement>
-  </requirements>-->
   <command interpreter="Rscript">
     region_motif_intersect.r --args $bgz_file.fields.path $tbi_file.fields.path $in_bed $out_tab
   </command>
@@ -17,8 +14,8 @@
     </param>
 
     <!--<param name="db_type" type="select" label="Select Motif Database" >
-      <option value="t">Test Pouya Subset (hg19)</option>
-      <option value="p">Pouya Encode Motifs (hg19)</option>
+      <option value="t">Test Encode Motifs (hg19)</option>
+      <option value="e">Encode Motifs (hg19)</option>
       <option value="j">Jaspar and Jolma Motifs (hg19)</option>
       <option value="m">Mouse Motifs (mm9)</option>
     </param>-->