comparison Galaxy-Workflow-Region_Motif_Count_Comparison_Pouya_Motifs.ga @ 29:c78ebf00379d draft

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29:c78ebf00379d

{
    "a_galaxy_workflow": "true", 
    "annotation": "{\n        \"refinery_type\": \"analysis\",\n        \"refinery_relationships\": [\n                {\n                        \"category\": \"1-1\",\n                        \"set1\": \"Region 1\",\n                        \"set2\": \"Region 2\"\n                }\n        ]\n}", 
    "format-version": "0.1", 
    "name": "Region Motif Count Comparison Pouya Motifs", 
    "steps": {
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            "input_connections": {}, 
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                {
                    "description": "", 
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            "id": 1, 
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                    "name": "Region 2"
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        "2": {
            "annotation": "{\n        \"out_tab\": {\n                \"name\": \"motifs_count_region_1\",\n                \"description\": \"Motif counts in region 1.\",\n                \"type\": \"tabular\"\n        }\n}", 
            "id": 2, 
            "input_connections": {
                "in_bed": {
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                    "output_name": "output"
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            "inputs": [], 
            "name": "Region Motif Intersect", 
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                {
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                    "type": "tabular"
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        "3": {
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            "annotation": "{\n        \"out_enriched\": {\n                \"name\": \"motifs_enriched\",\n                \"description\": \"Motifs enriched in regions 1 versus regions 2.\",\n                \"type\": \"tabular\"\n        },\n        \"out_depleted\": {\n                \"name\": \"motifs_depleted\",\n                \"description\": \"Motifs depleted in regions 1 versus regions 2.\",\n                \"type\": \"tabular\"\n        },\n       \"out_plots\": {\n                \"name\": \"motif_counts_plots\",\n                \"description\": \"Summary plots for motifs in regions 1 versus regions 2.\",\n                \"type\": \"png\"\n        }\n}", 
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            "input_connections": {
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                "in_tab_2": {
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                    "output_name": "out_tab"
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            }, 
            "inputs": [], 
            "name": "Region Motif Count Compare", 
            "outputs": [
                {
                    "name": "out_enriched", 
                    "type": "tabular"
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                {
                    "name": "out_depleted", 
                    "type": "tabular"
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                {
                    "name": "out_plots", 
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