Mercurial > repos > jeremyjliu > region_motif_enrichment

comparison region_motif_compare.r @ 36:b868314320e2 draft

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Uploaded
author jeremyjliu
date Fri, 06 Mar 2015 13:24:03 -0500
parents 4ce22698acb0
children 76e108a19e64
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35:4ce22698acb0 36:b868314320e2
21 options(warn=-1) 21 options(warn=-1)
22 22
23 # Set common and data directories 23 # Set common and data directories
24 args <- commandArgs() 24 args <- commandArgs()
25 workingDir = args[7] 25 workingDir = args[7]
26 pwmFile = args[8].split(',')[0] # If duplicate entires, take first one 26 pwmFile = unlist(strsplit(args[8], ','))[1] # If duplicate entires, take first one
27 27
28 # Set input and reference files 28 # Set input and reference files
29 inTab1 = args[9] 29 inTab1 = args[9]
30 inTab2 = args[10] 30 inTab2 = args[10]
31 enrichTab = args[11] 31 enrichTab = args[11]