Mercurial > repos > jeremyjliu > region_motif_enrichment

comparison region_motif_compare.r @ 33:9525574f700f draft

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Uploaded
author jeremyjliu
date Tue, 10 Feb 2015 01:02:56 -0500
parents 0e031bf8c5b1
children 4ce22698acb0
comparison
equal deleted inserted replaced
32:5101c1616be0 33:9525574f700f
30 pwmFile = concat(workingDir, "/pwms/pouya.pwms.from.seq.RData") 30 pwmFile = concat(workingDir, "/pwms/pouya.pwms.from.seq.RData")
31 } else if (dbCode == "j") { 31 } else if (dbCode == "j") {
32 pwmFile = concat(workingDir, "/pwms/jaspar.jolma.pwms.from.seq.RData") 32 pwmFile = concat(workingDir, "/pwms/jaspar.jolma.pwms.from.seq.RData")
33 } else if (dbCode == "m") { 33 } else if (dbCode == "m") {
34 pwmFile = concat(workingDir, "/pwms/mm9.pwms.from.seq.RData") 34 pwmFile = concat(workingDir, "/pwms/mm9.pwms.from.seq.RData")
35 } else if (dbCode == "c") { # rest of dbCode "c" implemeted when pwmFile loaded 35 } else if (dbCode == "c") { # rest of dbCode "c" implemented when pwmFile loaded
36 pwmFile = concat(workingDir, "/pwms/pouya.pwms.from.seq.RData") 36 pwmFile = concat(workingDir, "/pwms/pouya.pwms.from.seq.RData")
37 pwmFile2 = concat(workingDir, "/pwms/jaspar.jolma.pwms.from.seq.RData") 37 pwmFile2 = concat(workingDir, "/pwms/jaspar.jolma.pwms.from.seq.RData")
38 } else { 38 } else {
39 pwmFile = concat(workingDir, "/pwms/pouya.pwms.from.seq.RData") 39 pwmFile = concat(workingDir, "/pwms/pouya.pwms.from.seq.RData")
40 } 40 }