Mercurial > repos > jeremyjliu > region_motif_enrichment
comparison region_motif_intersect.xml @ 24:26674e770b59 draft
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| author | jeremyjliu |
|---|---|
| date | Fri, 21 Nov 2014 12:52:41 -0500 |
| parents | 2c909bfdd090 |
| children |
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| 23:d3e4ce1698b9 | 24:26674e770b59 |
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| 1 <tool id="region_motif_intersect" name="Region Motif Intersect"> | 1 <tool id="region_motif_intersect" name="Region Motif Intersect"> |
| 2 <description>for computing the motifs that lie inside a region set</description> | 2 <description>for computing the motifs that lie inside a region set</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="set_environment">RMOTIF_PATH</requirement> | 4 <requirement type="set_environment">RMOTIF_PATH</requirement> |
| 5 <requirement type="package" version="1.0.0">MOTIFS</requirement> | |
| 5 </requirements> | 6 </requirements> |
| 6 <command interpreter="Rscript"> | 7 <command interpreter="Rscript"> |
| 7 region_motif_intersect.r --args \$RMOTIF_PATH $db_type $in_bed $out_tab | 8 region_motif_intersect.r --args \$RMOTIF_PATH $db_type $in_bed $out_tab |
| 8 </command> | 9 </command> |
| 9 <inputs> | 10 <inputs> |