Mercurial > repos > jeremyjliu > region_motif_data_manager
changeset 2:d5faf2b51b07 draft
Uploaded
| author | jeremyjliu |
|---|---|
| date | Sun, 11 Jan 2015 20:30:46 -0500 |
| parents | 2ed33f9b9a47 |
| children | 8bf194e522bf |
| files | data_manager/data_manager_fetch_motifs.py |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/data_manager/data_manager_fetch_motifs.py Sun Jan 11 19:35:25 2015 -0500 +++ b/data_manager/data_manager_fetch_motifs.py Sun Jan 11 20:30:46 2015 -0500 @@ -26,12 +26,12 @@ fasta_reader = urllib2.urlopen( url ) data_table_entry = _stream_fasta_to_file( fasta_reader, target_directory, params ) - _add_data_table_entry( data_manager_dict, data_table_entry ) + _add_data_table_entry( data_manager_dict, 'motif_databases', data_table_entry ) -def _add_data_table_entry( data_manager_dict, data_table_entry ): +def _add_data_table_entry( data_manager_dict, data_table, data_table_entry ): data_manager_dict['data_tables'] = data_manager_dict.get( 'data_tables', {} ) - data_manager_dict['data_tables']['all_fasta'] = data_manager_dict['data_tables'].get( 'all_fasta', [] ) - data_manager_dict['data_tables']['all_fasta'].append( data_table_entry ) + data_manager_dict['data_tables'][data_table] = data_manager_dict['data_tables'].get( data_table, [] ) + data_manager_dict['data_tables'][data_table].append( data_table_entry ) return data_manager_dict def _stream_fasta_to_file( fasta_stream, target_directory, params, close_stream=True ):