# HG changeset patch
# User jeremyjliu
# Date 1428463144 14400
# Node ID 24a2c2783fb8d4670e5baa4ccc33d027eb36daa3
# Parent  a5421f83f972b52a67ba9c87fb6e8e4481aed7ea
Uploaded

diff -r a5421f83f972 -r 24a2c2783fb8 data_manager/data_manager_fetch_motifs.py
--- a/data_manager/data_manager_fetch_motifs.py	Thu Feb 26 22:52:42 2015 -0500
+++ b/data_manager/data_manager_fetch_motifs.py	Tue Apr 07 23:19:04 2015 -0400
@@ -28,29 +28,29 @@
                 "pouya_motifs.bed.bgz", "encode_bgz", "Encode Motifs (hg19) BGZ"]
         TBI = ['http://compbio.med.harvard.edu/motif-enrichment/pouya_motifs.bed.bgz.tbi',
                 "pouya_motifs.bed.bgz.tbi", "encode_tbi", "Encode Motifs (hg19) TBI"]
-        PWM = ['http://compbio.med.harvard.edu/motif-enrichment/pwms/pouya.pwms.from.seq.RData',
-                "pouya.pwms.from.seq.RData", "encode_pwm", "Encode Motifs (hg19) PWM"]        
+        PWM = ['http://compbio.med.harvard.edu/motif-enrichment/pwms/pouya.pwms.from.seq.meme.txt',
+                "pouya.pwms.from.seq.RData", "encode_pwm", "Encode Motifs (hg19) PWM MEME"]        
     elif motif_db == "jaspar":
         BGZ = ['http://compbio.med.harvard.edu/motif-enrichment/jaspar_jolma_motifs.bed.bgz',
                 "jaspar_jolma_motifs.bed.bgz", "jaspar_bgz", "Jaspar and Jolma Motifs (hg19) BGZ"]
         TBI = ['http://compbio.med.harvard.edu/motif-enrichment/jaspar_jolma_motifs.bed.bgz.tbi',
                 "jaspar_jolma_motifs.bed.bgz.tbi", "jaspar_tbi", "Jaspar and Jolma Motifs (hg19) TBI"]
-        PWM = ['http://compbio.med.harvard.edu/motif-enrichment/pwms/jaspar.jolma.pwms.from.seq.RData',
-                "jaspar.jolma.pwms.from.seq.RData", "jaspar_pwm", "Jaspar and Jolma Motifs (hg19) PWM"]
+        PWM = ['http://compbio.med.harvard.edu/motif-enrichment/pwms/jaspar.jolma.pwms.from.seq.meme.txt',
+                "jaspar.jolma.pwms.from.seq.RData", "jaspar_pwm", "Jaspar and Jolma Motifs (hg19) PWM MEME"]
     elif motif_db == "mouse":
         BGZ = ['http://compbio.med.harvard.edu/motif-enrichment/mm9_motifs_split.bed.bgz',
                 "mm9_motifs_split.bed.bgz", "mouse_bgz", "Mouse Motifs (mm9) BGZ"]
         TBI = ['http://compbio.med.harvard.edu/motif-enrichment/mm9_motifs_split.bed.bgz.tbi',
                 "mm9_motifs_split.bed.bgz.tbi", "mouse_tbi", "Mouse Motifs (mm9) TBI"]
-        PWM = ['http://compbio.med.harvard.edu/motif-enrichment/pwms/mm9.pwms.from.seq.RData',
-                "mm9.pwms.from.seq.RData", "mouse_pwm", "Mouse Motifs (mm9) PWM"]
+        PWM = ['http://compbio.med.harvard.edu/motif-enrichment/pwms/mm9.pwms.from.seq.meme.txt',
+                "mm9.pwms.from.seq.RData", "mouse_pwm", "Mouse Motifs (mm9) PWM MEME"]
     else:
         BGZ = ['http://compbio.med.harvard.edu/motif-enrichment/pouya_test_motifs.bed.bgz', 
                "pouya_test_motifs.bed.bgz", "test_bgz", "Test Encode Motifs (hg19) BGZ"]
         TBI = ['http://compbio.med.harvard.edu/motif-enrichment/pouya_test_motifs.bed.bgz.tbi',
                "pouya_test_motifs.bed.bgz.tbi", "test_tbi", "Test Encode Motifs (hg19) TBI"]
-        PWM = ['http://compbio.med.harvard.edu/motif-enrichment/pwms/pouya.pwms.from.seq.RData',
-                "pouya.pwms.from.seq.RData", "test_pwm", "Test Encode Motifs (hg19) PWM"] 
+        PWM = ['http://compbio.med.harvard.edu/motif-enrichment/pwms/pouya.pwms.from.seq.meme.txt',
+                "pouya.pwms.from.seq.RData", "test_pwm", "Test Encode Motifs (hg19) PWM MEME"] 
 
 
     # Save and add motif bgz file to motif_databases data table