comparison data_manager/data_manager_fetch_motifs.xml @ 1:2ed33f9b9a47 draft

Uploaded

0:ba049ce65693

<tool id="data_manager_fetch_motifs" name="Motif Database" version="1.0.0" tool_type="manage_data">
    <description>fetching</description>
    <command interpreter="python">data_manager_fetch_motifs.py "${out_file}" --motif_db ${motif_db_selector}</command>
    <inputs>
        <param name="motif_db_selector" type="select" label="Choose the source for the motif db">
            <option value="test" selected="True">Test Pouya Subset (hg19)</option>
            <option value="pouya">Pouya Encode Motifs (hg19)</option>

        <data name="out_file" format="data_manager_json"/>
    </outputs>
    <help>
        **What it does**

        Fetches a reference genome from various sources (UCSC, NCBI, URL, Galaxy History, or a server directory) and populates the "all_fasta" data table.

        **Notice:** If you leave name, description, or id blank, it will be generated automatically. 
    </help>
</tool>

1:2ed33f9b9a47

<tool id="data_manager_fetch_motifs" name="Install Motif Database" version="1.0.0" tool_type="manage_data">
    <description>Downloads motif databases in tabix format for use with region_motif_enrichment</description>
    <command interpreter="python">data_manager_fetch_motifs.py "${out_file}" --motif_db ${motif_db_selector}</command>
    <inputs>
        <param name="motif_db_selector" type="select" label="Choose the source for the motif db">
            <option value="test" selected="True">Test Pouya Subset (hg19)</option>
            <option value="pouya">Pouya Encode Motifs (hg19)</option>

        <data name="out_file" format="data_manager_json"/>
    </outputs>
    <help>
        **What it does**

        UPDATE THIS
    </help>
</tool>