comparison data_manager/data_manager_fetch_motifs.py @ 1:2ed33f9b9a47 draft

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author jeremyjliu
date Sun, 11 Jan 2015 19:35:25 -0500
parents ba049ce65693
children d5faf2b51b07
comparison
equal deleted inserted replaced
0:ba049ce65693 1:2ed33f9b9a47
63 target_directory = params[ 'output_data' ][0]['extra_files_path'] 63 target_directory = params[ 'output_data' ][0]['extra_files_path']
64 os.mkdir( target_directory ) 64 os.mkdir( target_directory )
65 data_manager_dict = {} 65 data_manager_dict = {}
66 66
67 #Fetch the Motif Database 67 #Fetch the Motif Database
68 download_motif_databases( data_manager_dict, params, target_directory, motif_db ) 68 download_motif_databases( data_manager_dict, params, target_directory, options.motif_db )
69 69
70 #save info to json file 70 #save info to json file
71 open( filename, 'wb' ).write( to_json_string( data_manager_dict ) ) 71 open( filename, 'wb' ).write( to_json_string( data_manager_dict ) )
72 72
73 if __name__ == "__main__": main() 73 if __name__ == "__main__": main()