Mercurial > repos > jeremyjliu > region_motif_data_manager
comparison data_manager/data_manager_fetch_motifs.py @ 1:2ed33f9b9a47 draft
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author | jeremyjliu |
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date | Sun, 11 Jan 2015 19:35:25 -0500 |
parents | ba049ce65693 |
children | d5faf2b51b07 |
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0:ba049ce65693 | 1:2ed33f9b9a47 |
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63 target_directory = params[ 'output_data' ][0]['extra_files_path'] | 63 target_directory = params[ 'output_data' ][0]['extra_files_path'] |
64 os.mkdir( target_directory ) | 64 os.mkdir( target_directory ) |
65 data_manager_dict = {} | 65 data_manager_dict = {} |
66 | 66 |
67 #Fetch the Motif Database | 67 #Fetch the Motif Database |
68 download_motif_databases( data_manager_dict, params, target_directory, motif_db ) | 68 download_motif_databases( data_manager_dict, params, target_directory, options.motif_db ) |
69 | 69 |
70 #save info to json file | 70 #save info to json file |
71 open( filename, 'wb' ).write( to_json_string( data_manager_dict ) ) | 71 open( filename, 'wb' ).write( to_json_string( data_manager_dict ) ) |
72 | 72 |
73 if __name__ == "__main__": main() | 73 if __name__ == "__main__": main() |