# HG changeset patch
# User jeremie
# Date 1404295135 14400
# Node ID e201ecde3bcba99d1b25f2f6e77e541181b3f9fd
# Parent  2e7e0d92cb40ea266de50e2bf6de0a43977f6321
Uploaded

diff -r 2e7e0d92cb40 -r e201ecde3bcb tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Jul 02 05:50:46 2014 -0400
+++ b/tool_dependencies.xml	Wed Jul 02 05:58:55 2014 -0400
@@ -19,18 +19,25 @@
 					$INSTALL_DIR
 					$BAM_ROOT"
 				</action> -->
-				<action type="move_file">
-                    <source>$BAM_ROOT/bin</source>
-                    <destination>./samtools</destination>
+				<action type="shell_command">
+					cp -r $BAM_ROOT/bin samtools
+                </action>
+                <action type="shell_command">
+					cp -r $BAM_ROOT/lib samtools
                 </action>
-                <action type="move_file">
+                <action type="shell_command">
+					cp -r $BAM_ROOT/include/bam samtools
+                </action>
+
+           <!--      <action type="shell_command">
                     <source>$BAM_ROOT/lib</source>
                     <destination>./samtools</destination>
                 </action>
-                <action type="move_directory_files">
+                <action type="shell_command">
                     <source_directory>$BAM_ROOT/include/bam</source_directory>
                     <destination_directory>./samtools</destination_directory>
-                </action> 
+                </action>  -->
+
 
 				<action type="shell_command">./INSTALL ./samtools</action>
 				<action type="move_file">