# HG changeset patch
# User jeremie
# Date 1404205571 14400
# Node ID d73b6c1ce7e6dc6cdca28a1099d6989684226854
# Parent  5bb7278d6da67dc27d58f840763f431b0ae34ceb
Uploaded

diff -r 5bb7278d6da6 -r d73b6c1ce7e6 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Jul 01 05:01:52 2014 -0400
+++ b/tool_dependencies.xml	Tue Jul 01 05:06:11 2014 -0400
@@ -11,7 +11,8 @@
                     </action>       
                 </actions>     -->            
                 <actions>
-                    <action type="download_by_url">https://github.com/genome/breakdancer/archive/master.zip</action>
+                    <action type="shell_command">git clone --recursive https://github.com/genome/breakdancer</action>
+                    <!-- <action type="download_by_url">https://github.com/genome/breakdancer/archive/master.zip</action> -->
                     <action type="shell_command">mkdir build</action>
                     <action type="change_directory">build</action>
                     <action type="shell_command">cmake .. -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=/usr/local</action>