# HG changeset patch
# User jeremie
# Date 1403789135 14400
# Node ID bf9475fceac3cc3bbf532af24cc10bfc4215fa48
# Parent  88209fdd378d65b7ea5cf0b195241d9195bbb911
Uploaded

diff -r 88209fdd378d -r bf9475fceac3 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Jun 26 09:16:55 2014 -0400
+++ b/tool_dependencies.xml	Thu Jun 26 09:25:35 2014 -0400
@@ -4,6 +4,12 @@
         <install version="1.0">
             <actions>
                 <action type="download_by_url">https://drive.google.com/file/d/0B-NlbBomCRJYSE83UE5IQlUtb0U/edit?usp=sharing</action>
+                <action type="shell_command">cp breakdancer-max $INSTALL_DIR/vcftools/bin</action>
+                <action type="shell_command">cp bam2cfg.pl $INSTALL_DIR/bin</action>
+                <action type="shell_command">cp breakdancer2vcf.py $INSTALL_DIR/bin</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
             </actions>
         </install>
         <readme>