Mercurial > repos > jeremie > package_breakdancer_1_2_6

view tool_dependencies.xml @ 7:bf9475fceac3 draft

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author jeremie
date Thu, 26 Jun 2014 09:25:35 -0400
parents eae82622ea7b
children 0a2932df8014
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<?xml version="1.0"?>
<tool_dependency>
    <package name="breakdancer-max" version="1.2.6">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://drive.google.com/file/d/0B-NlbBomCRJYSE83UE5IQlUtb0U/edit?usp=sharing</action>
                <action type="shell_command">cp breakdancer-max $INSTALL_DIR/vcftools/bin</action>
                <action type="shell_command">cp bam2cfg.pl $INSTALL_DIR/bin</action>
                <action type="shell_command">cp breakdancer2vcf.py $INSTALL_DIR/bin</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>