# HG changeset patch
# User jeremie
# Date 1404310739 14400
# Node ID 18d9c156ecd9337ef008d9d2ba6f687497bc481d
# Parent  2c3b8a1d8f4b7ef892bf642dd6e96501781ba08f
Uploaded

diff -r 2c3b8a1d8f4b -r 18d9c156ecd9 breakdancer.xml
--- a/breakdancer.xml	Wed Jul 02 10:17:20 2014 -0400
+++ b/breakdancer.xml	Wed Jul 02 10:18:59 2014 -0400
@@ -14,7 +14,9 @@
 		-o1 $outputRawFile
 		<!-- optional -->
 		-o2 $outputVcfFile
+	#if $chromosome:
 		-o $chromosome
+	#end if
 		-s $minLength
 		-c $cutoff
 		-m $maxSvSize