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author jeremie
date Thu, 26 Jun 2014 06:10:39 -0400
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<tool id="breakdancer" name="breakdancer" version="1.2.6">
	<description></description>
	<parallelism method="basic"></parallelism>
		<command interpreter="python">
			breakdancer.py
			-i1 $input
			-o1 $output_raw
			-o2 $output_vcf
	</command>

 <!--  <requirements>
		<requirement type="package">breakdancer-max</requirement>
	</requirements> -->

	<inputs>
		<param format="bam" name="input" type="data" help=""  label="bam file" />
	</inputs>

	<outputs>
		<data name="output_raw" format="tabular" label="breakdancer raw" />
		<data name="output_vcf" format="vcf" label="breakdancer vcf" />
	</outputs>
	<help>

	</help>
</tool>