Mercurial > repos > jeremie > breakdancer_bin
comparison breakdancer.py @ 22:96e938d6904e draft default tip
Uploaded
| author | jeremie |
|---|---|
| date | Mon, 07 Jul 2014 10:32:05 -0400 |
| parents | b83483e9b1e8 |
| children |
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| 21:020fb811317b | 22:96e938d6904e |
|---|---|
| 138 time0 = time.time() | 138 time0 = time.time() |
| 139 tempDir = tempfile.mkdtemp() | 139 tempDir = tempfile.mkdtemp() |
| 140 args = parser.parse_args() | 140 args = parser.parse_args() |
| 141 getVersion("breakdancer-max") | 141 getVersion("breakdancer-max") |
| 142 | 142 |
| 143 os.system('echo $PATH') | |
| 143 try: | 144 try: |
| 144 # config = bam2cfg(args, tempDir) | 145 # config = bam2cfg(args, tempDir) |
| 145 # breakdancer(args, config) | 146 # breakdancer(args, config) |
| 146 # breakdancer2vcf(args) | 147 # breakdancer2vcf(args) |
| 147 | 148 |