Mercurial > repos > jeremie > breakdancer_bin
comparison breakdancer.py @ 17:48d2f8be5c97 draft
Uploaded
| author | jeremie |
|---|---|
| date | Wed, 02 Jul 2014 10:23:38 -0400 |
| parents | 2c3b8a1d8f4b |
| children | 0e73928aa0ca |
comparison
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| 16:5bfef0cee99b | 17:48d2f8be5c97 |
|---|---|
| 182 # pour etre sur que toute les variations ont ete prises en compte | 182 # pour etre sur que toute les variations ont ete prises en compte |
| 183 compare(args.outputRawFile, args.outputVcfFile) | 183 compare(args.outputRawFile, args.outputVcfFile) |
| 184 | 184 |
| 185 sys.stdout.write('\nDone in %d seconds\n' %(int(time.time()-time0))) | 185 sys.stdout.write('\nDone in %d seconds\n' %(int(time.time()-time0))) |
| 186 | 186 |
| 187 if (os.path.getsize(errorFile)>0): | 187 # if (os.path.getsize(errorFile)>0): |
| 188 sys.stdout.write('At least one non fatal error was send, check the file : %s\n' %(errorFile)) | 188 # sys.stdout.write('At least one non fatal error was send, check the file : %s\n' %(errorFile)) |
| 189 try: | 189 # try: |
| 190 err = open(errorFile, 'r') | 190 # err = open(errorFile, 'r') |
| 191 errors = err.read() | 191 # errors = err.read() |
| 192 err.close() | 192 # err.close() |
| 193 sys.stdout.write("Errors :\n%s" %(errors)) | 193 # sys.stdout.write("Errors :\n%s" %(errors)) |
| 194 except Exception, e: | 194 # except Exception, e: |
| 195 sys.stderr.write('%s\n' % str(e)) | 195 # sys.stderr.write('%s\n' % str(e)) |
| 196 else: | 196 # else: |
| 197 sys.stdout.write('BreakDancer successful') | 197 sys.stdout.write('BreakDancer successful') |
| 198 | 198 |
| 199 except Exception, e: | 199 except Exception, e: |
| 200 sys.stdout.write('BreakDancer fail\n') | 200 sys.stdout.write('BreakDancer fail\n') |
| 201 sys.stderr.write('%s\n' % str(e)) | 201 sys.stderr.write('%s\n' % str(e)) |
| 202 sys.exit() | 202 sys.exit() |